Literature

Comparison of automated vs manual extraction of NSAIDs from plasma using ISOLUTE® SLE+

Written by Biotage | Dec 6, 2025 2:00:00 PM

Introduction

Automated sample preparation using the Biotage® Extrahera™ was compared to an equivalent manual method utilizing a vacuum manifold. A selection of non-steroidal anti-inflammatory drugs (NSAIDS) were extracted from pooled stripped plasma using a supported liquid extraction procedure. ISOLUTE® SLE+ 400 µL sample volume plates, part number 820-0400-P01 were used for extraction.
Resulting extracts from both sample preparation methods were subsequently analysed by LC-MS/MS.

Procedure

A pooled plasma sample was prepared in a sufficient quantity to run a full 96-well plate for each processing method. This pooled plasma sample was fortified with Sulindac, Ketoprofen and Indomethacin at a concentration of 25 ng/mL respectively.
From this pooled plasma sample 250 µL was transferred to all wells of two 96-well plates.
All subsequent aspects of sample preparation were performed in duplicate on two separate plates utilizing either Extrahera™ or manual preparation using a calibrated air-displacement pipette.

The pooled plasma sample was pre-treated 1:1 (v/v) with 1 % formic acid (250 µL). This sample dilution results in approximate loading pH of 3.2.
After pre-wetting the pipette tips via aspirate/dispense cycling and to mix the samples; 400 µL of the pre-treated sample was loaded to each well of the ISOLUTE® SLE+ plates. Flows were initiated using a pulse of positive pressure (Extrahera™) or vacuum (manual method).

After leaving for 5 minutes to allow the sample to completely absorb into the plates, elution was performed by the application of 2 x 0.9 mL aliquots of methyl tertiary-butyl ether (MTBE) to the ISOLUTE® SLE+ plates. The extracts were collected in 2 mL 96-well collection plates under gravity elution, and as a final step to recover all available solvent from the media, by applying a pulse of positive pressure (Extrahera™) or vacuum (manual method). The extracts were evaporated to dryness in a TurboVap® 96 at 37 °C and reconstituted in 200 µL of 60:40 (v/v) water/methanol solution. The plates were mixed on an orbital shaker for 10 minutes.

HPLC conditions

Instrument: Waters Alliance 2795
Cartridge: ACE Excel 2 C18-AR 50 x 2.1mm id cartridge
Mobile Phase: 50:50 (v/v) 0.1 % (v/v) formic acid/acetonitrile at 0.25 mL/min
Injection Volume:  25 µL

Mass spectrometry


Instrument: Waters Quattro Ultima Pt

MRM Conditions

 Analyte

 Transition

 RT (min)

 Dwell (sec)

 Cone (V)

 Col Energy (V)

Indomethacin

358.1 to 139.0

2.5

0.1

35

18

Sulindac

357.1 to 233.1

0.9

0.1

35

26

Ketoprofen

255.1 to 209.1

1.2

0.1

35

13

 

 

 

 

 

 

 

Experimental precautions


  • Both plates were evaporated side by side on the same evaporation instrument (TurboVap® 96).
  • During analysis on the LC-MS system samples were injected alternately from the two plates to reduce the effect of any sample stability issues.
  • The same batch/bottles of samples, reagents and solvents were used for both methods.

Results


Average peak area data was calculated for all three compounds to compare any improvements in analyte recovery between Biotage® Extrahera™ and manually processed samples.
Peak area ratio data was also generated for all samples by referencing the analyte vs. Ketoprofen. This provides standardized data to allow a comparison of the % RSD of the Extrahera vs. manual data sets. 

 

 

Extrahera Sulindac Peak Area Ratio Summary

Manual Sulindac Peak Area Ratio Summary

Average Sulindac Peak Area

24622

22847

Improvement (%) vs. Manual Method

7.8

-

 

 

 

Average IS Peak Area

35199

32683

Improvement (%) vs. Manual Method

7.7

-

 

 

 

Average Peak Area Ratio

0.701

0.705

% RSD of Extrahera™ Extraction

4.01

6.43

Improvement (%) vs. Manual Method

37.6

-

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Extrahera Indomethacin Peak Area Ratio Summary

Manual Indomethacin Peak Area Ratio Summary

Average Indomethacin Peak Area

34395

27965

Improvement (%) vs. Manual Method

23.0

-

 

 

 

Average IS Peak Area

35199

32683

Improvement (%) vs. Manual Method

7.7

-

 

 

 

Average Peak Area Ratio

0.977

0.857

% RSD of Extrahera™ Extraction

5.46

8.56

Improvement (%) vs. Manual Method

36.2

-

 

 

 

 

 

 

 

 

 

 

 

 

 

Conclusion


A significant reduction to the % RSD was measured when using the Biotage® Extrahera™ for both compounds compared to the manual processing approach.

% RSD

Manual Procedure (n=96)

Extrahera (n=96)

Sulindac

6.43

4.01

Indomethacin

8.56

5.46

 

 

 

 

For Sulindac the % RSD improved by 37%, for Indomethacin there was also an improvement in the % RSD by 36 % to 5.46%. The results also suggest that methods performed on the Extrahera™ could give higher recoveries due to increases in the absolute average peak areas

 


Average Peak Area

Manual Procedure (n=96)

Extrahera (n=96)

Sulindac

22847

24622

Indomethacin

27965

34395

 

 

 

 

 

Both compounds returned average peak areas that were higher when sample extraction was performed using Extrahera™ than the manual method with an average peak area increase of 15.4%. The greatest improvement was measured with Indomethacin where the average peak area was increased by 23%.

 

Literature number: PPS361